[DFTB-Plus-User] MD_NVE job problem
nkarimov
nkarimov at uci.edu
Mon Jun 4 21:35:39 CEST 2018
Hello,
I am a new user. I try to perform test calculations of MD (NVE) for an
acrylic acid molecule.
But there is a problem: after a few steps the molecule is splitting up
into atoms.
Could you take a look at my input file and give me some suggestions
about it?
Geometry = GenFormat {
9 C
H O C
1 2 -0.6298552075 -1.2915412252 0.0473193564
2 3 -0.4850436821 -0.0891284588 0.0064915606
3 2 -1.5249349504 0.7707759355 -0.0252152106
4 3 0.8066493245 0.6320056300 -0.0155700879
5 3 1.9563829759 -0.0445621962 0.0153469673
6 1 0.7693502708 1.7174607721 -0.0570422509
7 1 2.9149072107 0.4673418967 -0.0000219901
8 1 1.9496309947 -1.1319992807 0.0568836905
9 1 -2.3370722554 0.2363787099 -0.0085400376
}
Driver = VelocityVerlet {
MovedAtoms = 1:-1
#ConvergentForcesOnly = No
Steps = 1000
TimeStep = 5
#Thermostat = NoseHoover{
#Temperature[Kelvin] = 300
#CouplingStrength=500
#}
Thermostat = None {
InitialTemperature = 300.0
}
OutputPrefix = "md_nvt_1.out"
}
Hamiltonian = DFTB {
#Dispersion = DFTD3 {}
Charge = 0
#ForceEvaluation = 'Dynamics'
SCC = Yes
MaxSCCIterations = 250
SCCTolerance = 1.0e-4
Mixer = Broyden {
MixingParameter = 0.3
}
Differentiation = Richardson {}
SlaterKosterFiles = Type2FileNames {
Prefix = "/export/home/nkarimov/DFTB/mio-1-1/"
Separator = "-"
Suffix = ".skf"
}
MaxAngularMomentum {
C = "p"
O = "p"
H = "s"
}
Filling = Fermi {
Temperature [Kelvin] = 300.0
}
}
Options {}
ParserOptions {
ParserVersion = 5
}
Thanks,
Natalia Karimova
Assistant Research Scientist I
Chemistry Department
University of California, Irvine
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