[DFTB-Plus-User] Geometry optimizations with PBC

Bálint Aradi aradi at uni-bremen.de
Tue Mar 8 10:58:59 CET 2022


Dear Jerry,

the problem is, that you can not combine XyzFormat with LatticeVectors
and Periodic. When XyzFormat is specified, it must contain valid
xyz-formatted data, but no further keywords. And unfortunately, there is
no standardized way to specify periodicity in the xyz-format.

Probably the easiest workaround is to write your lattice vectors as a
3x3 matrix in a file (e.g. latvecs.dat) and convert your geometry with

xyz2gen -l latvecs.dat Complex_MgCl2_RR-solvated.xyz

from the xyz format to the gen format, which has a standardized way to
contain periodicity information. And in the input, you would then need

Geometry = GenFormat {
  <<< Complex_MgCl2_RR-solvated.gen
}

The xyz2gen script is part of the dptools (dftbplus-tools) package.

  Best regards,

  Bálint

-- 
Dr. Bálint Aradi
Bremen Center for Computational Materials Science, University of Bremen
http://www.bccms.uni-bremen.de/cms/people/b-aradi/


-------------- next part --------------
A non-text attachment was scrubbed...
Name: signature.asc
Type: application/pgp-signature
Size: 833 bytes
Desc: OpenPGP digital signature
URL: <http://mailman.zfn.uni-bremen.de/pipermail/dftb-plus-user/attachments/20220308/6f196c51/attachment-0001.sig>


More information about the DFTB-Plus-User mailing list