[DFTB-Plus-User] Spin polarization and other
Mat Toliday
djlets2004 at yahoo.co.uk
Tue Dec 3 16:33:45 CET 2019
Hello,I don't think you can use DFTB+ inside of Gaussian but it claims to be capable of DFTB calculations. I spent a couple of hours trying to modify the Slater-Koster files and then lost interest...I don't think DFTB+ has the geometry optimisers needed for TS searching but these can be found using another package alongside DFTB+, namely the Atomic simulation Environment which has lots of useful geometry/optimiser tools and will interface with DFTB+.As for your TS simulations:
I notice between your two input files there is a change in the total charge. This is most likely the the reason the dE value is too high.Yours,Mat
On Tuesday, 3 December 2019, 14:49:47 CET, Martin Richter <m-richter93 at gmx.de> wrote:
Hello dear DFTB+ community, I have a few general questions and one specific problem. Id be very thankflul if you could help me. - I assume you cannot use DFTB+ via gaussian? I have seen options for DFTB and DFTBA though. - I saw a question on 'spin polarization calculation' in the achrive, but no answer. Does this simply mean no one responded yet or did I miss something?- Are there anywhere some more examples? I went through the tutorials of the homepage, but cannot find more useful examples. - Can you perform transition state optimization ? And now my question regarding spin polarization. Im fairly new to QM chemistry so pardon any harsh mistakes. I want to study a hydrogen atom transfer reaction. To begin I just looked at CH4 + CH3* --> CH3* +CH4 (star * means radical). For the energy difference between precomplex and transition state (TS) I get from gaussian calculation dE = 58 kJ/mol and literature tells me dE = 39 kJ/mol. With my attempt in DFTB+ I get dE = 506 kJ/mol, which is way too much. Im wondering if I just made some mistakes or if maybe DFTB+ is not suited for this. Best regards and thanks,Martin My input files look like this: For TS: Geometry = GenFormat {
9 C
C H
1 1 -1.3492310000 0.0000000000 -0.0000040000
2 2 -1.6387210000 -1.0390570000 -0.2023440000
3 2 -1.6388130000 0.3443150000 1.0009990000
4 2 -1.6386560000 0.6947620000 -0.7986980000
5 1 1.3492320000 0.0000020000 0.0000070000
6 2 1.6387010000 -0.6957490000 0.7978260000
7 2 1.6387040000 -0.3431010000 -1.0014410000
8 2 1.6387850000 1.0388000000 0.2035920000
9 2 -0.0000060000 0.0000200000 0.0000490000
}Driver = {}Hamiltonian = DFTB {
Scc = Yes
SlaterKosterFiles {
H-H = "/home/richtemn/Documents/DFTB+/recipes/slakos/mio-ext/H-H.skf"
C-H = "/home/richtemn/Documents/DFTB+/recipes/slakos/mio-ext/C-H.skf"
H-C = "/home/richtemn/Documents/DFTB+/recipes/slakos/mio-ext/H-C.skf"
C-C = "/home/richtemn/Documents/DFTB+/recipes/slakos/mio-ext/C-C.skf"
}
MaxAngularMomentum {
C = "p"
H = "s"
}
Charge = -1.0000000000000000
SpinPolarisation = Colinear {
UnpairedElectrons = 1.0
}
SpinConstants = {
C={-0.023}
H={-0.072}
}
}Options {}Analysis {
CalculateForces = Yes
}ParserOptions {
ParserVersion = 7
} and for the precomplex: Geometry = GenFormat {
9 C
C H
1 1 -4.673 1.29559 -0.1981
2 2 -4.68347 1.67679 0.82361
3 2 -4.47712 1.97238 -1.03062
4 2 -4.8825 0.24263 -0.38913
5 1 -0.56698 0.5267 0.17636
6 2 -0.15029 0.1488 -0.76893
7 2 -0.42145 -0.22437 0.96669
8 2 -1.64234 0.72488 0.05129
9 2 -0.05174 1.45716 0.45691
}Driver = {}Hamiltonian = DFTB {
Scc = Yes
SlaterKosterFiles {
H-H = "/home/richtemn/Documents/DFTB+/recipes/slakos/mio-ext/H-H.skf"
C-H = "/home/richtemn/Documents/DFTB+/recipes/slakos/mio-ext/C-H.skf"
H-C = "/home/richtemn/Documents/DFTB+/recipes/slakos/mio-ext/H-C.skf"
C-C = "/home/richtemn/Documents/DFTB+/recipes/slakos/mio-ext/C-C.skf"
}
MaxAngularMomentum {
C = "p"
H = "s"
}
Charge = 0.0000000000000000
SpinPolarisation = Colinear {
UnpairedElectrons = 1.0
} SpinConstants = {
C={-0.023}
H={-0.072}
}}Options {}Analysis {
CalculateForces = Yes
}ParserOptions {
ParserVersion = 7
}_______________________________________________
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