[DFTB-Plus-User] FW: Wave plot
Chad Junkermeier
junkerme at hawaii.edu
Tue Aug 20 02:26:01 CEST 2019
Aloha,
I recently set up DFTB+ version 19.1 on a cluster. I have it working well for creating PDOS and band structures. I am stuck on getting it to create the input files (detailed.xml and eigenvec.bin) needed for running waveplot. When I try to produce the output dftb+ gives me an error message similar to this:
Reading SK-files:
Done.
WARNING!
-> The following 1 node(s) have been ignored by the parser:
(1)
Path: dftbplusinput/Options/WriteEigenvectors
Line: 32-32 (File: dftb_in.hsd)
ERROR!
-> Code halting due to the presence of errors in dftb_in file.
I am using DFTB+ compiled using ifort using openMP but not MPI or any of the optional components.
As a test, I copied and pasted the dftb_in.hsd file from https://dftbplus-recipes.readthedocs.io/en/stable/basics/waveplot.html and changed it to use the skf files that I am using. It still failed.
Here are the relevant parts of my job script (using the example dftb_in.hsd file):
mkdir -p /f/j/waveplot_test
cd /f/j/waveplot_test
# DFTB+ input file
cat > dftb_in.hsd << EOF
Geometry = GenFormat {
3 C
O H
1 1 0.00000000000E+00 -0.10000000000E+01 0.00000000000E+00
2 2 0.00000000000E+00 0.00000000000E+00 0.78306400000E+00
3 2 0.00000000000E+00 0.00000000000E+00 -0.78306400000E+00
}
Driver = ConjugateGradient {
MovedAtoms = 1:-1
MaxForceComponent = 1.0e-4
MaxSteps = 100
OutputPrefix = "geom.out"
}
Hamiltonian = DFTB {
Scc = Yes
SccTolerance = 1.0e-5
SlaterKosterFiles = Type2FileNames {
Prefix = ""
Separator = "-"
Suffix = ".skf"
}
MaxAngularMomentum = {
O = "p"
H = "s"
}
}
Options {
WriteDetailedXml = Yes
WriteEigenvectors = Yes
}
ParserOptions {
ParserVersion = 7
}
EOF
# Run DFTB+
cp /f/j/Documents/matsci-0-3/O-O.skf /f/j/Documents/matsci-0-3/H-O.skf /f/j/Documents/matsci-0-3/O-H.skf /f/j/Documents/matsci-0-3/H-H.skf .
cp /f/j/Documents/dftbplus-19.1/_build/prog/dftb+/dftb+ .
./dftb+ > dftb_waveplot_input.out
I hope that someone can tell me where I am going wrong.
Thanks.
Chad Junkermeier, PhD
Physics Lecturer
Mathematics Lecturer
STEM Department
University of Hawai'i Maui College
310 W Ka'ahumanu Ave
Kahului, HI 96732
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