[DFTB-Plus-User] Parallel DFTB+
nkarimov
nkarimov at uci.edu
Tue Sep 25 00:05:10 CEST 2018
Hello,
I want to run the job in parallel using the 2 nodes and 24 processors
per node.
What mpirun command should I use?
My run file is:
-------------------------------------------
#!/usr/bin/env bash
#SBATCH --job-name=dftb-test
#SBATCH --output=dftb-test.o%j.%N
#SBATCH --partition=compute
#SBATCH --nodes=2
#SBATCH --ntasks-per-node=24
#SBATCH --time=00:30:00
module purge
module load intel/2016.3.210
module load intelmpi/2016.3.210
module load mkl/11.3.3
module load gnutools/2.69
module list
printenv
export
PATH="${HOME}/Software/dftbplus/dftbplus-18.1/_install/bin:${PATH}"
export
LD_LIBRARY_PATH="${HOME}/Software/dftbplus/dftbplus-18.1/_install/lib:${LD_LIBRARY_PATH}"
export
PYTHONPATH="${HOME}/Software/dftbplus/dftbplus-18.1/_install/lib/python2.6/sit-packages:${PYTHONPATH}"
export OMP_NUM_THREADS=1
time -p mpirun dftb+
-------------------------------
It is run, but calculation time is weird. Computational time of my job
on 1 node is shorter than on 2 nodes.
Thanks for the help,
Natalia Karimova
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