[DFTB-Plus-User] MD output looks the same as all the steps with NPT ensemble
Faruq, Muhammad
MAF2MPO at bolton.ac.uk
Thu Dec 17 22:50:48 CET 2015
Dear All
Could you please help me to find out the problem from my MD calculations. It looks to me the first step and the last step all are the same volume as well as energy. In this calculation, I used NPT ensemble so that volume should be changed at each step. Here is the output and input details. Any help will be appreciated and thanks in advance
Kind Regards
Muhammad Faruq
University of Bolton
MD step: 0
Volume: 0.130165E+05 au^3
Pressure: 0.166809E-02 au 0.490769E+11 Pa
Potential Energy: -326.3118416085 H -8879.3970 eV
MD Kinetic Energy: 0.0000024000 H 0.0001 eV
Total MD Energy: -326.3118392085 H -8879.3969 eV
MD Temperature: 0.0000000100 au 0.0032 K
MD step: 1410
Nose-Hoover chain variables
x:
0.1000000000E+01 0.1000000000E+01 0.1000000000E+01
v:
-0.7044897072E-08 -0.7046621982E-08 -0.7046621982E-08
g:
-0.9999981342E+04 -0.1000000000E+05 -0.1000000000E+05
Lattice vectors (A)
1.244800000000E+01 0.000000000000E+00 0.000000000000E+00
0.000000000000E+00 1.244800000000E+01 0.000000000000E+00
0.000000000000E+00 0.000000000000E+00 1.244800000000E+01
Volume: 0.130165E+05 au^3
Pressure: 0.166810E-02 au 0.490772E+11 Pa
Potential Energy: -326.3118436796 H -8879.3970 eV
MD Kinetic Energy: 0.0000024000 H 0.0001 eV
Total MD Energy: -326.3118412796 H -8879.3970 eV
MD Temperature: 0.0000000100 au 0.0032 K
MD step: 5080
Nose-Hoover chain variables
x:
0.1000000000E+01 0.1000000000E+01 0.1000000000E+01
v:
-0.2539484575E-07 -0.2539662198E-07 -0.2539662198E-07
g:
-0.9999894883E+04 -0.1000000000E+05 -0.1000000000E+05
Lattice vectors (A)
1.244800000000E+01 0.000000000000E+00 0.000000000000E+00
0.000000000000E+00 1.244800000000E+01 0.000000000000E+00
0.000000000000E+00 0.000000000000E+00 1.244800000000E+01
Volume: 0.130165E+05 au^3
Pressure: 0.166810E-02 au 0.490772E+11 Pa
Potential Energy: -326.3118436796 H -8879.3970 eV
MD Kinetic Energy: 0.0000024000 H 0.0001 eV
Total MD Energy: -326.3118412796 H -8879.3970 eV
MD Temperature: 0.0000000100 au 0.0032 K
Here is Input file:
Geometry = GenFormat {
<<< Cu5Si.gen
}
Driver = VelocityVerlet {
MovedAtoms = "1:-1"
# Steps = 250
TimeStep = 1.0e-15 #Time interval between two MD steps
KeepStationary = No #Remove translational motion from the system
MDRestartFrequency=10
Velocities = {}
ConvergentForcesOnly = No
Barostat = {
Pressure = 0
Timescale =10
}
Thermostat = NoseHoover{
Temperature [Kelvin] = TemperatureProfile { # Temperatures in K
constant 1 0.0 # Setting T=10 K for the 0th MD-step
linear 250 300.0 # Linearly rising T in 250 steps up to T=300 K
linear 1415 2000.0 # Linearly rising T in 1415 steps up to T=2000 K by rate 1.2K/fs
constant 2000 2000.0 # Constant T through 2000 steps
exponential 1415 300.0 # Exponential decreasing in 1415 steps to T=300K
}
CouplingStrength=100
IntegratorSteps = 1
}
OutputPrefix = "final_geo"
}
Hamiltonian = DFTB {
SCC = Yes
SCCTolerance = 1.0e-5
EwaldParameter = 0.1
MaxSCCIterations = 10
Mixer = Broyden {
MixingParameter = 0.2
}
MaxAngularMomentum = {
Cu = "d"
Si = "d"
}
Filling = Fermi {}
SlaterKosterFiles = Type2FileNames {
Prefix = "/home/maf2mpo/FAST_cal_Others/DFTB+/sk/matsci-0-3/"
Separator = "-"
Suffix = ".skf"
}
KPointsAndWeights = {
0.0 0.0 0.0 1.0
}
ReadInitialCharges = Yes
}
Options = {
WriteEigenvectors = No
WriteResultsTag = Yes
WriteDetailedOut = Yes
WriteBandOut = Yes
}
More information about the DFTB-Plus-User
mailing list