[DFTB-Plus-User] fail to use Nose-Hoove Thermostat
孟丽娟
230119292 at seu.edu.cn
Fri Sep 7 14:52:48 CEST 2012
Dear All:
I am a new user of DFTB+. I use the Nose-Hoove Thermostat to control the system temperature. However, the error " Failure in diagonalisation routine dsygvd, non-positive definite overlap! Minor 1 responsible." is present in the log file. The structure has been optimized and computation is normal if other thermostat way is applied, which means that the structure used is reasonable. I present the input file and corresponding md.out file in the below section. I am looking forward to your help.
Lijuan Meng
Southeast University
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Geometry = GenFormat {
<<< "am-opt.gen"
}
Driver = VelocityVerlet{
MovedAtoms = 1:132
Steps = 200000
TimeStep [Femtosecond] = 0.5
OutputPrefix = "am-2500k"
Thermostat = NoseHoover {
Temperature [Kelvin] = 2500.0
CouplingStrength = 500.0
}
# Velocities = {
#<<< "VELOC.DAT"
#}
MDRestartFrequency = 1
}
Hamiltonian = DFTB {
SCC = Yes
SCCTolerance = 1.0e-4
MaxSCCIterations = 200
Mixer = Broyden {}
Eigensolver = DivideAndConquer {}
MaxAngularMomentum = {
C = p
Ni = d
}
Charge = 0.000
Filling = Fermi {
Temperature [Kelvin] = 10000
}
SlaterKosterFiles = {
C-C = "C-C.skf"
C-Ni = "C-Ni.skf"
Ni-C = "Ni-C.skf"
Ni-Ni = "Ni-Ni.skf"
}
KPointsAndWeights = SupercellFolding{
1 0 0
0 1 0
0 0 1
0.0 0.0 0.0
}
}
Options = {
RandomSeed = 0
WriteDetailedOut = No
WriteBandOut = No
}
ParserOptions = {
ParserVersion = 4
}
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
md.out
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MD step: 0
Nose-Hoover chain variables
x:
0.1000000000E+01 0.1000000000E+01 0.1000000000E+01
v:
0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
g:
0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
Pressure: -0.102769E-04 au -0.302358E+09 Pa
Potential Energy: -229.3775402846 H -6241.6804 eV
MD Kinetic Energy: 1.5556980384 H 42.3327 eV
Total MD Energy: -227.8218422463 H -6199.3477 eV
MD Temperature: 0.0079170384 au 2500.0000 K
MD step: 1
Nose-Hoover chain variables
x:
NaN NaN NaN
v:
NaN NaN NaN
g:
NaN NaN NaN
Pressure: NaN au NaN Pa
Potential Energy: -229.3640994512 H -6241.3147 eV
MD Kinetic Energy: NaN H NaN eV
Total MD Energy: NaN H NaN eV
MD Temperature: NaN au NaN K
MD step: 2
Nose-Hoover chain variables
x:
NaN NaN NaN
v:
NaN NaN NaN
g:
NaN NaN NaN
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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